J3_9NJV_034

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

9NJV|1|R3|U|1240, 9NJV|1|R3|U|1298, 9NJV|1|R3|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NJV_034 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.1862

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

9NJV|1|R3|C|1237
9NJV|1|R3|A|1238
9NJV|1|R3|A|1239
9NJV|1|R3|U|1240
9NJV|1|R3|G|1241
*
9NJV|1|R3|C|1296
9NJV|1|R3|G|1297
9NJV|1|R3|U|1298
9NJV|1|R3|A|1299
9NJV|1|R3|G|1300
9NJV|1|R3|U|1301
9NJV|1|R3|C|1302
9NJV|1|R3|C|1303
*
9NJV|1|R3|G|1334
9NJV|1|R3|U|1335
9NJV|1|R3|C|1336
9NJV|1|R3|G|1337

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sg

30S ribosomal protein S7

Chain sm

30S ribosomal protein S13