J3_9NO7_007

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

9NO7|1|A|G|686, 9NO7|1|A|G|792, 9NO7|1|A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NO7_007 not in the Motif Atlas

Geometric match to J3_9DFE_007

Geometric discrepancy: 0.0721

The information below is about J3_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

11

Unit IDs

9NO7|1|A|C|683
9NO7|1|A|G|684
9NO7|1|A|A|685
9NO7|1|A|G|686
9NO7|1|A|C|687
9NO7|1|A|U|688
9NO7|1|A|A|689
*
9NO7|1|A|U|773
9NO7|1|A|A|774
9NO7|1|A|G|775
*
9NO7|1|A|C|791
9NO7|1|A|G|792
9NO7|1|A|A|793
9NO7|1|A|G|794

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain D

50S ribosomal protein L2