J3_9NO7_016

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

9NO7|1|A|A|2518, 9NO7|1|A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NO7_016 not in the Motif Atlas

Geometric match to J3_7A0S_011

Geometric discrepancy: 0.0887

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9NO7|1|A|C|2517
9NO7|1|A|A|2518
9NO7|1|A|U|2519
9NO7|1|A|C|2520
*
9NO7|1|A|G|2545
9NO7|1|A|U|2546
9NO7|1|A|U|2547
*
9NO7|1|A|A|2561
9NO7|1|A|U|2562
9NO7|1|A|U|2563
9NO7|1|A|A|2564
9NO7|1|A|A|2565
9NO7|1|A|A|2566
9NO7|1|A|G|2567

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L14