J3_9NO7_018
3D structure
- PDB id
- 9NO7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.13 Å
Loop
- Sequence
- CC*GUGGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 9NO7|1|A|G|2833, 9NO7|1|A|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NO7_018 not in the Motif Atlas
- Geometric match to J3_9DFE_019
- Geometric discrepancy: 0.0898
- The information below is about J3_9DFE_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9NO7|1|A|C|2814
9NO7|1|A|C|2815
*
9NO7|1|A|G|2831
9NO7|1|A|U|2832
9NO7|1|A|G|2833
9NO7|1|A|G|2834
9NO7|1|A|A|2835
9NO7|1|A|U|2836
*
9NO7|1|A|A|2882
9NO7|1|A|A|2883
9NO7|1|A|U|2884
9NO7|1|A|C|2885
9NO7|1|A|G|2886
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L3
- Chain R
- 50S ribosomal protein L17
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