J3_9NO7_030

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9NO7|1|a|U|1212, 9NO7|1|a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NO7_030 not in the Motif Atlas

Geometric match to J3_4LFB_016

Geometric discrepancy: 0.1111

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9NO7|1|a|C|990
9NO7|1|a|U|991
9NO7|1|a|U|992
9NO7|1|a|G|993
9NO7|1|a|A|994
9NO7|1|a|C|995
9NO7|1|a|A|996
9NO7|1|a|U|997
*
9NO7|1|a|A|1044
9NO7|1|a|C|1045
9NO7|1|a|A|1046
9NO7|1|a|G|1047
*
9NO7|1|a|C|1210
9NO7|1|a|U|1211
9NO7|1|a|U|1212
9NO7|1|a|A|1213
9NO7|1|a|C|1214
9NO7|1|a|G|1215

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14 type Z

Chain w

Peptide chain release factor 1