J3_9NPY_001
3D structure
- PDB id
- 9NPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUU(A2M)AG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NPY_001 not in the Motif Atlas
- Geometric match to J3_8P9A_076
- Geometric discrepancy: 0.1193
- The information below is about J3_8P9A_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
9NPY|1|i|C|1218
9NPY|1|i|C|1219
9NPY|1|i|A|1220
9NPY|1|i|G|1221
*
9NPY|1|i|C|1645
9NPY|1|i|C|1646
9NPY|1|i|A|1647
9NPY|1|i|G|1648
9NPY|1|i|U|1649
9NPY|1|i|A|1650
9NPY|1|i|A|1651
*
9NPY|1|i|U|1673
9NPY|1|i|G|1674
9NPY|1|i|A|1675
9NPY|1|i|U|1676
9NPY|1|i|U|1677
9NPY|1|i|A2M|1678
9NPY|1|i|A|1679
9NPY|1|i|G|1680
Current chains
- Chain i
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein uS7, RPS5
- Chain Q
- 40S ribosomal protein uS9, RPS16
- Chain c
- 40S ribosomal protein eS28, RPS28
Coloring options: