J3_9NPY_008
3D structure
- PDB id
- 9NPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 9NPY|1|i|U|1535, 9NPY|1|i|G|1603
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NPY_008 not in the Motif Atlas
- Geometric match to J3_8CRE_086
- Geometric discrepancy: 0.1058
- The information below is about J3_8CRE_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
9NPY|1|i|C|1532
9NPY|1|i|A|1533
9NPY|1|i|C|1534
9NPY|1|i|U|1535
9NPY|1|i|G|1536
*
9NPY|1|i|C|1597
9NPY|1|i|G|1598
9NPY|1|i|U|1599
9NPY|1|i|G|1600
9NPY|1|i|A|1601
9NPY|1|i|U|1602
9NPY|1|i|G|1603
9NPY|1|i|G|1604
*
9NPY|1|i|C|1635
9NPY|1|i|G|1636
9NPY|1|i|A|1637
9NPY|1|i|G|1638
Current chains
- Chain i
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein uS7, RPS5
- Chain S
- 40S ribosomal protein uS13, RPS18
- Chain T
- 40S ribosomal protein eS19, RPS19
- Chain Y
- 40S ribosomal protein eS25, RPS25
Coloring options: