J3_9OFV_008
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 9OFV|1|f|A|817, 9OFV|1|f|G|924, 9OFV|1|f|A|925
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9OFV_008 not in the Motif Atlas
- Geometric match to J3_8P9A_049
- Geometric discrepancy: 0.0514
- The information below is about J3_8P9A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9OFV|1|f|U|814
9OFV|1|f|G|815
9OFV|1|f|A|816
9OFV|1|f|A|817
9OFV|1|f|C|818
9OFV|1|f|U|819
9OFV|1|f|A|820
*
9OFV|1|f|U|905
9OFV|1|f|A|906
9OFV|1|f|G|907
*
9OFV|1|f|C|923
9OFV|1|f|G|924
9OFV|1|f|A|925
9OFV|1|f|A|926
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain W
- 60S ribosomal protein L37-A
- Chain Y
- 60S ribosomal protein L39
- Chain j
- 60S ribosomal protein L2-A
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