J3_9PJ7_006
3D structure
- PDB id
- 9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Doxycycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CUAG*CGUAG*CUUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 9PJ7|1|A|U|855, 9PJ7|1|A|A|857
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PJ7_006 not in the Motif Atlas
- Homologous match to J3_6CZR_018
- Geometric discrepancy: 0.1869
- The information below is about J3_6CZR_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.3
- Basepair signature
- cWW-tSH-F-tWW-tHS-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9PJ7|1|A|C|808
9PJ7|1|A|U|809
9PJ7|1|A|A|810
9PJ7|1|A|G|811
*
9PJ7|1|A|C|841
9PJ7|1|A|G|842
9PJ7|1|A|U|843
9PJ7|1|A|A|844
9PJ7|1|A|G|845
*
9PJ7|1|A|C|852
9PJ7|1|A|U|853
9PJ7|1|A|U|854
9PJ7|1|A|U|855
9PJ7|1|A|A|856
9PJ7|1|A|A|857
9PJ7|1|A|G|858
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain H
- 30S ribosomal protein S8
Coloring options: