J3_9PJ7_035

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

9PJ7|1|a|A|2700, 9PJ7|1|a|U|2701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9PJ7_035 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.104

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9PJ7|1|a|C|2699
9PJ7|1|a|A|2700
9PJ7|1|a|U|2701
9PJ7|1|a|C|2702
*
9PJ7|1|a|G|2727
9PJ7|1|a|U|2728
9PJ7|1|a|U|2729
*
9PJ7|1|a|A|2743
9PJ7|1|a|U|2744
9PJ7|1|a|U|2745
9PJ7|1|a|A|2746
9PJ7|1|a|A|2747
9PJ7|1|a|A|2748
9PJ7|1|a|G|2749

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L14