J3_9Q3R_013

3D structure

PDB id

9Q3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9Q3R|1|A|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q3R_013 not in the Motif Atlas

Homologous match to J3_8B0X_021

Geometric discrepancy: 0.0416

The information below is about J3_8B0X_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9Q3R|1|A|C|2091
9Q3R|1|A|U|2092
9Q3R|1|A|G|2093
*
9Q3R|1|A|C|2196
9Q3R|1|A|U|2197
9Q3R|1|A|A|2198
9Q3R|1|A|A|2199
9Q3R|1|A|C|2200
*
9Q3R|1|A|G|2223
9Q3R|1|A|G|2224
9Q3R|1|A|A|2225
9Q3R|1|A|C|2226
9Q3R|1|A|A|2227
9Q3R|1|A|G|2228

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

Large ribosomal subunit protein bL9

Chain Z

50S ribosomal protein L28