J3_9Q3R_033
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q3R_033 not in the Motif Atlas
- Homologous match to J3_8B0X_010
- Geometric discrepancy: 0.0477
- The information below is about J3_8B0X_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9Q3R|1|a|C|1063
9Q3R|1|a|G|1064
9Q3R|1|a|U|1065
9Q3R|1|a|C|1066
9Q3R|1|a|A|1067
9Q3R|1|a|G|1068
*
9Q3R|1|a|C|1107
9Q3R|1|a|G|1108
9Q3R|1|a|C|1109
9Q3R|1|a|A|1110
9Q3R|1|a|A|1111
9Q3R|1|a|C|1112
9Q3R|1|a|C|1113
*
9Q3R|1|a|G|1187
9Q3R|1|a|A|1188
9Q3R|1|a|U|1189
9Q3R|1|a|G|1190
9Q3R|1|a|A|1191
9Q3R|1|a|C|1192
9Q3R|1|a|G|1193
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain c
- Small ribosomal subunit protein uS3
- Chain e
- Small ribosomal subunit protein uS5
- Chain g
- 30S ribosomal protein S7
- Chain i
- Small ribosomal subunit protein uS9
- Chain j
- Small ribosomal subunit protein uS10
- Chain n
- Small ribosomal subunit protein uS14
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