J3_9Q3R_036
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 9Q3R|1|a|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q3R_036 not in the Motif Atlas
- Homologous match to J3_8B0X_031
- Geometric discrepancy: 0.0669
- The information below is about J3_8B0X_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9Q3R|1|a|U|1116
9Q3R|1|a|A|1117
9Q3R|1|a|U|1118
*
9Q3R|1|a|A|1155
9Q3R|1|a|G|1156
9Q3R|1|a|A|1157
9Q3R|1|a|C|1158
9Q3R|1|a|U|1159
9Q3R|1|a|G|1160
9Q3R|1|a|C|1161
*
9Q3R|1|a|G|1175
9Q3R|1|a|A|1176
9Q3R|1|a|G|1177
9Q3R|1|a|G|1178
9Q3R|1|a|A|1179
9Q3R|1|a|A|1180
9Q3R|1|a|G|1181
9Q3R|1|a|G|1182
9Q3R|1|a|U|1183
9Q3R|1|a|G|1184
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain g
- 30S ribosomal protein S7
- Chain i
- Small ribosomal subunit protein uS9
- Chain j
- Small ribosomal subunit protein uS10
- Chain n
- Small ribosomal subunit protein uS14
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