J3_9QEG_023

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CUAA*UGCAG*CAUUAAG

Length

16 nucleotides

Bulged bases

9QEG|1|Aa|U|880, 9QEG|1|Aa|A|882

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QEG_023 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1191

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

9QEG|1|Aa|C|834
9QEG|1|Aa|U|835
9QEG|1|Aa|A|836
9QEG|1|Aa|A|837
*
9QEG|1|Aa|U|866
9QEG|1|Aa|G|867
9QEG|1|Aa|C|868
9QEG|1|Aa|A|869
9QEG|1|Aa|G|870
*
9QEG|1|Aa|C|877
9QEG|1|Aa|A|878
9QEG|1|Aa|U|879
9QEG|1|Aa|U|880
9QEG|1|Aa|A|881
9QEG|1|Aa|A|882
9QEG|1|Aa|G|883

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ab

Small ribosomal subunit protein uS2

Chain Ah

Small ribosomal subunit protein uS8

Chain d

mRNA molecule