J3_9QEG_025

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QEG_025 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.074

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9QEG|1|Aa|U|952
9QEG|1|Aa|G|953
9QEG|1|Aa|G|954
9QEG|1|Aa|A|955
*
9QEG|1|Aa|U|1245
9QEG|1|Aa|A|1246
9QEG|1|Aa|C|1247
*
9QEG|1|Aa|G|1347
9QEG|1|Aa|G|1348
9QEG|1|Aa|A|1349
9QEG|1|Aa|A|1350

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain Ai

Small ribosomal subunit protein uS9

Chain Am

Small ribosomal subunit protein uS13