J3_9QIW_010

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

9QIW|1|L5|A|2396, 9QIW|1|L5|U|2398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QIW_010 not in the Motif Atlas

Homologous match to J3_8CRE_013

Geometric discrepancy: 0.1048

The information below is about J3_8CRE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

9QIW|1|L5|C|2393
9QIW|1|L5|G|2394
9QIW|1|L5|A|2395
9QIW|1|L5|A|2396
9QIW|1|L5|G|2397
9QIW|1|L5|U|2398
9QIW|1|L5|G|2399
*
9QIW|1|L5|C|2805
9QIW|1|L5|A|2806
9QIW|1|L5|A|2807
*
9QIW|1|L5|U|2819
9QIW|1|L5|C|2820
9QIW|1|L5|U|2821
9QIW|1|L5|G|2822

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CD

GTP-binding protein 4

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34