J3_9QJC_002

3D structure

PDB id

9QJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast pre-60S Domain II intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UC*GAGGACUGCG*CAAGGA

Length

18 nucleotides

Bulged bases

9QJC|1|1|A|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QJC|1|1|U|502
9QJC|1|1|C|503
*
9QJC|1|1|G|588
9QJC|1|1|A|589
9QJC|1|1|G|590
9QJC|1|1|G|591
9QJC|1|1|A|592
9QJC|1|1|C|593
9QJC|1|1|U|594
9QJC|1|1|G|595
9QJC|1|1|C|596
9QJC|1|1|G|597
*
9QJC|1|1|C|606
9QJC|1|1|A|607
9QJC|1|1|A|608
9QJC|1|1|G|609
9QJC|1|1|G|610
9QJC|1|1|A|611

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain E

60S ribosomal protein L6-A

Chain F

60S ribosomal protein L7-A

Chain e

60S ribosomal protein L32