J3_9QQA_010
3D structure
- PDB id
- 9QQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and NMT1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9QQA|1|A2|G|1257, 9QQA|1|A2|A|1259, 9QQA|1|A2|A|1261
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9QQA_010 not in the Motif Atlas
- Geometric match to J3_8CRE_080
- Geometric discrepancy: 0.091
- The information below is about J3_8CRE_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9QQA|1|A2|C|1238
9QQA|1|A2|PSU|1239
9QQA|1|A2|U|1240
9QQA|1|A2|A|1241
9QQA|1|A2|A|1242
9QQA|1|A2|U|1243
9QQA|1|A2|U|1244
9QQA|1|A2|PSU|1245
*
9QQA|1|A2|G|1256
9QQA|1|A2|G|1257
9QQA|1|A2|G|1258
9QQA|1|A2|A|1259
9QQA|1|A2|A|1260
9QQA|1|A2|A|1261
9QQA|1|A2|C|1262
9QQA|1|A2|C|1263
9QQA|1|A2|U|1264
9QQA|1|A2|C|1265
9QQA|1|A2|A|1266
9QQA|1|A2|C|1267
*
9QQA|1|A2|G|1517
9QQA|1|A2|G|1518
9QQA|1|A2|C|1519
9QQA|1|A2|U|1520
9QQA|1|A2|G|1521
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AC
- Ubiquitin-ribosomal protein eS31 fusion protein
- Chain AG
- Small ribosomal subunit protein uS14
- Chain Ao
- Small ribosomal subunit protein uS19
- Chain Ar
- Small ribosomal subunit protein uS13
- Chain At
- Small ribosomal subunit protein uS10
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