J3_9QQA_025

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

9QQA|1|B5|A|2239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QQA_025 not in the Motif Atlas

Geometric match to J3_8CRE_013

Geometric discrepancy: 0.1003

The information below is about J3_8CRE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

9QQA|1|B5|C|2236
9QQA|1|B5|G|2237
9QQA|1|B5|A|2238
9QQA|1|B5|A|2239
9QQA|1|B5|G|2240
9QQA|1|B5|U|2241
9QQA|1|B5|G|2242
*
9QQA|1|B5|C|2648
9QQA|1|B5|A|2649
9QQA|1|B5|A|2650
*
9QQA|1|B5|U|2662
9QQA|1|B5|C|2663
9QQA|1|B5|U|2664
9QQA|1|B5|G|2665

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

Ribosomal protein L19

Chain Bg

60S ribosomal protein L34