J3_9QQA_026
3D structure
- PDB id
- 9QQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and NMT1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAG*CC(A2M)UAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 9QQA|1|B5|U|2631, 9QQA|1|B5|A|2632, 9QQA|1|B5|U|2633
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9QQA_026 not in the Motif Atlas
- Geometric match to J3_4V9F_006
- Geometric discrepancy: 0.1036
- The information below is about J3_4V9F_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.1
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9QQA|1|B5|G|2245
9QQA|1|B5|A|2246
9QQA|1|B5|A|2247
9QQA|1|B5|G|2248
*
9QQA|1|B5|C|2628
9QQA|1|B5|C|2629
9QQA|1|B5|A2M|2630
9QQA|1|B5|U|2631
9QQA|1|B5|A|2632
9QQA|1|B5|U|2633
9QQA|1|B5|C|2634
*
9QQA|1|B5|G|2643
9QQA|1|B5|U|2644
9QQA|1|B5|C|2645
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain Bg
- 60S ribosomal protein L34
- Chain Bj
- Ribosomal protein L37
- Chain Bl
- 60S ribosomal protein L39-like
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