J3_9QQB_009

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QQB_009 not in the Motif Atlas

Geometric match to J3_8P9A_076

Geometric discrepancy: 0.1639

The information below is about J3_8P9A_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

9QQB|1|A2|C|1219
9QQB|1|A2|C|1220
9QQB|1|A2|A|1221
9QQB|1|A2|G|1222
*
9QQB|1|A2|C|1646
9QQB|1|A2|C|1647
9QQB|1|A2|A|1648
9QQB|1|A2|G|1649
9QQB|1|A2|U|1650
9QQB|1|A2|A|1651
9QQB|1|A2|A|1652
*
9QQB|1|A2|U|1674
9QQB|1|A2|G|1675
9QQB|1|A2|A|1676
9QQB|1|A2|U|1677
9QQB|1|A2|U|1678
9QQB|1|A2|A2M|1679
9QQB|1|A2|A|1680
9QQB|1|A2|G|1681

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AB

Small ribosomal subunit protein eS28

Chain Ae

Small ribosomal subunit protein uS7

Chain Ap

Small ribosomal subunit protein uS9