J3_9QQB_012

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9QQB|1|A2|G|1275, 9QQB|1|A2|G|1508, 9QQB|1|A2|U|1510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QQB_012 not in the Motif Atlas

Geometric match to J3_8P9A_079

Geometric discrepancy: 0.1297

The information below is about J3_8P9A_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_87797.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

9QQB|1|A2|C|1273
9QQB|1|A2|C|1274
9QQB|1|A2|G|1275
9QQB|1|A2|G|1276
9QQB|1|A2|A|1277
9QQB|1|A2|C|1278
*
9QQB|1|A2|G|1321
9QQB|1|A2|G|1322
9QQB|1|A2|G|1323
9QQB|1|A2|U|1324
9QQB|1|A2|G|1325
*
9QQB|1|A2|U|1505
9QQB|1|A2|U|1506
9QQB|1|A2|A|1507
9QQB|1|A2|G|1508
9QQB|1|A2|A|1509
9QQB|1|A2|U|1510
9QQB|1|A2|G|1511

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

Ubiquitin-ribosomal protein eS31 fusion protein

Chain AG

Small ribosomal subunit protein uS14

Chain Aj

S10_plectin domain-containing protein