J3_9QQB_026

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

9QQB|1|B5|A|2239, 9QQB|1|B5|U|2241

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QQB_026 not in the Motif Atlas

Geometric match to J3_8CRE_013

Geometric discrepancy: 0.108

The information below is about J3_8CRE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

9QQB|1|B5|C|2236
9QQB|1|B5|G|2237
9QQB|1|B5|A|2238
9QQB|1|B5|A|2239
9QQB|1|B5|G|2240
9QQB|1|B5|U|2241
9QQB|1|B5|G|2242
*
9QQB|1|B5|C|2648
9QQB|1|B5|A|2649
9QQB|1|B5|A|2650
*
9QQB|1|B5|U|2662
9QQB|1|B5|C|2663
9QQB|1|B5|U|2664
9QQB|1|B5|G|2665

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

Ribosomal protein L19

Chain Bg

60S ribosomal protein L34