J3_9R3A_033

3D structure

PDB id

9R3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9R3A|1|a|A|2518, 9R3A|1|a|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9R3A_033 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.2897

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9R3A|1|a|C|2517
9R3A|1|a|A|2518
9R3A|1|a|U|2519
9R3A|1|a|C|2520
*
9R3A|1|a|G|2545
9R3A|1|a|U|2546
9R3A|1|a|A|2547
*
9R3A|1|a|U|2561
9R3A|1|a|U|2562
9R3A|1|a|U|2563
9R3A|1|a|A|2564
9R3A|1|a|A|2565
9R3A|1|a|A|2566
9R3A|1|a|G|2567

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

Large ribosomal subunit protein uL14