J3_9R9O_010

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UU*AGAAG*CAUUUGA

Length

14 nucleotides

Bulged bases

9R9O|1|C1|A|1065, 9R9O|1|C1|U|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9O|1|C1|U|986
9R9O|1|C1|U|987
*
9R9O|1|C1|A|1062
9R9O|1|C1|G|1063
9R9O|1|C1|A|1064
9R9O|1|C1|A|1065
9R9O|1|C1|G|1066
*
9R9O|1|C1|C|1092
9R9O|1|C1|A|1093
9R9O|1|C1|U|1094
9R9O|1|C1|U|1095
9R9O|1|C1|U|1096
9R9O|1|C1|G|1097
9R9O|1|C1|A|1098

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LF

60S ribosomal protein L7-A

Chain LT

60S ribosomal protein L21-A

Chain Lb

60S ribosomal protein L29