J3_9R9O_010
3D structure
- PDB id
- 9R9O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 9R9O|1|C1|A|1065, 9R9O|1|C1|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9R9O_010 not in the Motif Atlas
- Homologous match to J3_9PN5_010
- Geometric discrepancy: 0.2117
- The information below is about J3_9PN5_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_22278.2
- Basepair signature
- cWW-cWW-cHW-F-cSS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9R9O|1|C1|U|986
9R9O|1|C1|U|987
*
9R9O|1|C1|A|1062
9R9O|1|C1|G|1063
9R9O|1|C1|A|1064
9R9O|1|C1|A|1065
9R9O|1|C1|G|1066
*
9R9O|1|C1|C|1092
9R9O|1|C1|A|1093
9R9O|1|C1|U|1094
9R9O|1|C1|U|1095
9R9O|1|C1|U|1096
9R9O|1|C1|G|1097
9R9O|1|C1|A|1098
Current chains
- Chain C1
- 25S ribosomal RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L7-A
- Chain LT
- 60S ribosomal protein L21-A
- Chain Lb
- 60S ribosomal protein L29
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