J3_9R9O_017
3D structure
- PDB id
- 9R9O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- 9R9O|1|C1|U|2514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9R9O_017 not in the Motif Atlas
- Homologous match to J3_9PN5_018
- Geometric discrepancy: 0.1101
- The information below is about J3_9PN5_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63968.2
- Basepair signature
- cWW-cWW-F-F-cWW-F-tWH-tHS-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9R9O|1|C1|A|2432
9R9O|1|C1|U|2433
9R9O|1|C1|U|2434
9R9O|1|C1|G|2435
*
9R9O|1|C1|C|2512
9R9O|1|C1|U|2513
9R9O|1|C1|U|2514
9R9O|1|C1|A|2515
9R9O|1|C1|U|2516
9R9O|1|C1|U|2517
*
9R9O|1|C1|A|2590
9R9O|1|C1|A|2591
9R9O|1|C1|G|2592
9R9O|1|C1|A|2593
9R9O|1|C1|C|2594
9R9O|1|C1|A|2595
9R9O|1|C1|U|2596
9R9O|1|C1|U|2597
Current chains
- Chain C1
- 25S ribosomal RNA
Nearby chains
- Chain LA
- 60S ribosomal protein L2-A
- Chain LG
- 60S ribosomal protein L8-A
- Chain LN
- 60S ribosomal protein L15-A
- Chain Li
- 60S ribosomal protein L36-A
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