J3_9R9O_025
3D structure
- PDB id
- 9R9O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 9R9O|1|C2|A|46, 9R9O|1|C2|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9R9O_025 not in the Motif Atlas
- Homologous match to J3_9PN5_028
- Geometric discrepancy: 0.0864
- The information below is about J3_9PN5_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-cWS-tHH-tSS-cWW-F-F
- Number of instances in this motif group
- 7
Unit IDs
9R9O|1|C2|A|41
9R9O|1|C2|G|42
9R9O|1|C2|A|43
9R9O|1|C2|U|44
9R9O|1|C2|U|45
9R9O|1|C2|A|46
9R9O|1|C2|A|47
9R9O|1|C2|G|48
*
9R9O|1|C2|C|431
9R9O|1|C2|G|432
9R9O|1|C2|C|433
9R9O|1|C2|G|434
9R9O|1|C2|C|435
9R9O|1|C2|A|436
9R9O|1|C2|A|437
9R9O|1|C2|A|438
9R9O|1|C2|U|439
*
9R9O|1|C2|A|464
9R9O|1|C2|G|465
9R9O|1|C2|U|466
Current chains
- Chain C2
- 18S ribosomal RNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S9-A
- Chain SX
- 40S ribosomal protein S23-A
Coloring options: