J3_9R9O_030
3D structure
- PDB id
- 9R9O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 9R9O|1|C2|A|1093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9R9O_030 not in the Motif Atlas
- Geometric match to J3_8CRE_077
- Geometric discrepancy: 0.1486
- The information below is about J3_8CRE_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_41498.1
- Basepair signature
- cWW-tWW-cWW-tWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
9R9O|1|C2|C|1037
9R9O|1|C2|U|1038
9R9O|1|C2|A|1039
*
9R9O|1|C2|U|1079
9R9O|1|C2|U|1080
9R9O|1|C2|A|1081
9R9O|1|C2|C|1082
9R9O|1|C2|G|1083
*
9R9O|1|C2|C|1090
9R9O|1|C2|A|1091
9R9O|1|C2|A|1092
9R9O|1|C2|A|1093
9R9O|1|C2|G|1094
Current chains
- Chain C2
- 18S ribosomal RNA
Nearby chains
- Chain SA
- 40S ribosomal protein S0-A
- Chain SV
- 40S ribosomal protein S21-A
- Chain SW
- 40S ribosomal protein S22-A
- Chain Sa
- Small ribosomal subunit protein eS26A
- Chain Sb
- 40S ribosomal protein S27-A
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