J3_9RHU_026

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9RHU_026 not in the Motif Atlas

Geometric match to J3_5D8H_001

Geometric discrepancy: 0.2023

The information below is about J3_5D8H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.2

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

4

Unit IDs

9RHU|1|A3|G|1908
9RHU|1|A3|A|1909
9RHU|1|A3|C|1910
*
9RHU|1|A3|G|1934
9RHU|1|A3|C|1935
9RHU|1|A3|U|1936
9RHU|1|A3|A|1937
9RHU|1|A3|A|1938
9RHU|1|A3|G|1939
9RHU|1|A3|G|1940
*
9RHU|1|A3|C|1955
9RHU|1|A3|A|1956
9RHU|1|A3|C|1957

Current chains

Chain A3

28S rRNA

Nearby chains

Chain m2

Large ribosomal subunit protein uL10

Chain n2

60S ribosomal protein L12