J3_9RHU_033

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A3|A|2441
9RHU|1|A3|G|2442
9RHU|1|A3|A|2443
9RHU|1|A3|A|2444
9RHU|1|A3|G|2445
*
9RHU|1|A3|C|2580
9RHU|1|A3|C|2581
*
9RHU|1|A3|G|2585
9RHU|1|A3|A|2586
9RHU|1|A3|A|2587
9RHU|1|A3|A|2588
9RHU|1|A3|A|2589
9RHU|1|A3|U|2590

Current chains

Chain A3

28S rRNA

Nearby chains

Chain D3

Large ribosomal subunit protein uL2

Chain MB

60S ribosomal protein L34

Chain k2

60S ribosomal protein L37a