J3_9RVC_006
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUAA*UGCAG*CAUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 9RVC|1|A|U|881, 9RVC|1|A|A|883
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9RVC_006 not in the Motif Atlas
- Homologous match to J3_6CZR_018
- Geometric discrepancy: 0.1705
- The information below is about J3_6CZR_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.3
- Basepair signature
- cWW-tSH-F-tWW-tHS-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9RVC|1|A|C|834
9RVC|1|A|U|835
9RVC|1|A|A|836
9RVC|1|A|A|837
*
9RVC|1|A|U|867
9RVC|1|A|G|868
9RVC|1|A|C|869
9RVC|1|A|A|870
9RVC|1|A|G|871
*
9RVC|1|A|C|878
9RVC|1|A|A|879
9RVC|1|A|U|880
9RVC|1|A|U|881
9RVC|1|A|A|882
9RVC|1|A|A|883
9RVC|1|A|G|884
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- Small ribosomal subunit protein uS2
- Chain H
- Small ribosomal subunit protein uS8
- Chain X
- spa mRNA
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