J3_9RVC_012
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9RVC_012 not in the Motif Atlas
- Homologous match to J3_6CZR_023
- Geometric discrepancy: 0.1565
- The information below is about J3_6CZR_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.2
- Basepair signature
- cWW-F-F-F-tHW-F-F-F-tSS-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9RVC|1|A|C|1075
9RVC|1|A|G|1076
9RVC|1|A|U|1077
9RVC|1|A|C|1078
9RVC|1|A|A|1079
9RVC|1|A|G|1080
*
9RVC|1|A|C|1119
9RVC|1|A|G|1120
9RVC|1|A|C|1121
9RVC|1|A|A|1122
9RVC|1|A|A|1123
9RVC|1|A|C|1124
9RVC|1|A|C|1125
*
9RVC|1|A|G|1198
9RVC|1|A|A|1199
9RVC|1|A|U|1200
9RVC|1|A|G|1201
9RVC|1|A|A|1202
9RVC|1|A|C|1203
9RVC|1|A|G|1204
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- Small ribosomal subunit protein uS2
- Chain C
- Small ribosomal subunit protein uS3
- Chain E
- Small ribosomal subunit protein uS5
- Chain G
- Small ribosomal subunit protein uS7
- Chain I
- Small ribosomal subunit protein uS9
- Chain N
- Small ribosomal subunit protein uS14B
- Chain j
- Small ribosomal subunit protein uS10
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