J3_9SS4_012
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- 9SS4|1|D2|A|2198
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SS4_012 not in the Motif Atlas
- Homologous match to J3_7A0S_009
- Geometric discrepancy: 0.198
- The information below is about J3_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17460.1
- Basepair signature
- cWW-tHH-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9SS4|1|D2|C|2091
9SS4|1|D2|U|2092
9SS4|1|D2|G|2093
*
9SS4|1|D2|C|2196
9SS4|1|D2|U|2197
9SS4|1|D2|A|2198
9SS4|1|D2|A|2199
9SS4|1|D2|C|2200
*
9SS4|1|D2|G|2223
9SS4|1|D2|G|2224
9SS4|1|D2|A|2225
9SS4|1|D2|C|2226
9SS4|1|D2|A|2227
9SS4|1|D2|G|2228
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B1
- Large ribosomal subunit protein bL28
- Chain BB
- Large ribosomal subunit protein uL2
- Chain BI
- Large ribosomal subunit protein bL9
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