J3_9SYR_035

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SYR_035 not in the Motif Atlas

Homologous match to J3_9PN5_040

Geometric discrepancy: 0.0928

The information below is about J3_9PN5_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.7

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9SYR|1|S1|U|1350
9SYR|1|S1|G|1351
*
9SYR|1|S1|U|1360
9SYR|1|S1|G|1361
9SYR|1|S1|U|1362
9SYR|1|S1|C|1363
*
9SYR|1|S1|G|1375
9SYR|1|S1|A|1376
9SYR|1|S1|U|1377
9SYR|1|S1|A|1378
9SYR|1|S1|A|1379

Current chains

Chain S1

18S rRNA

Nearby chains

Chain Sb

40S ribosomal protein S17

Chain St

Small ribosomal subunit protein uS2

Chain Sv

40S ribosomal protein S2