J3_9T0Z_006
3D structure
- PDB id
- 9T0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- HPFcold Bound Hibernating C. burnetii 30S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 9T0Z|1|A|U|867, 9T0Z|1|A|A|869
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9T0Z_006 not in the Motif Atlas
- Homologous match to J3_6CZR_018
- Geometric discrepancy: 0.1209
- The information below is about J3_6CZR_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.3
- Basepair signature
- cWW-tSH-F-tWW-tHS-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9T0Z|1|A|C|823
9T0Z|1|A|U|824
9T0Z|1|A|A|825
9T0Z|1|A|G|826
*
9T0Z|1|A|C|853
9T0Z|1|A|G|854
9T0Z|1|A|A|855
9T0Z|1|A|A|856
9T0Z|1|A|G|857
*
9T0Z|1|A|C|864
9T0Z|1|A|G|865
9T0Z|1|A|U|866
9T0Z|1|A|U|867
9T0Z|1|A|A|868
9T0Z|1|A|A|869
9T0Z|1|A|G|870
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain E
- Small ribosomal subunit protein uS5
- Chain H
- Small ribosomal subunit protein uS8
- Chain U
- Small ribosomal subunit protein bS21
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