J3_9T4R_006
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CUAA*UGCAG*CAUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 9T4R|1|A|U|880, 9T4R|1|A|A|882
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9T4R_006 not in the Motif Atlas
- Homologous match to J3_6CZR_018
- Geometric discrepancy: 0.1803
- The information below is about J3_6CZR_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.3
- Basepair signature
- cWW-tSH-F-tWW-tHS-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9T4R|1|A|C|834
9T4R|1|A|U|835
9T4R|1|A|A|836
9T4R|1|A|A|837
*
9T4R|1|A|U|866
9T4R|1|A|G|867
9T4R|1|A|C|868
9T4R|1|A|A|869
9T4R|1|A|G|870
*
9T4R|1|A|C|877
9T4R|1|A|A|878
9T4R|1|A|U|879
9T4R|1|A|U|880
9T4R|1|A|A|881
9T4R|1|A|A|882
9T4R|1|A|G|883
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- Small ribosomal subunit protein uS2
- Chain H
- Small ribosomal subunit protein uS8
- Chain X
- aur mRNA
Coloring options: