J3_9T4R_013
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9T4R_013 not in the Motif Atlas
- Homologous match to J3_6CZR_023
- Geometric discrepancy: 0.1378
- The information below is about J3_6CZR_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.2
- Basepair signature
- cWW-F-F-F-tHW-F-F-F-tSS-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9T4R|1|A|C|1074
9T4R|1|A|G|1075
9T4R|1|A|U|1076
9T4R|1|A|C|1077
9T4R|1|A|A|1078
9T4R|1|A|G|1079
*
9T4R|1|A|C|1118
9T4R|1|A|G|1119
9T4R|1|A|C|1120
9T4R|1|A|A|1121
9T4R|1|A|A|1122
9T4R|1|A|C|1123
9T4R|1|A|C|1124
*
9T4R|1|A|G|1197
9T4R|1|A|A|1198
9T4R|1|A|U|1199
9T4R|1|A|G|1200
9T4R|1|A|A|1201
9T4R|1|A|C|1202
9T4R|1|A|G|1203
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- Small ribosomal subunit protein uS3
- Chain E
- Small ribosomal subunit protein uS5
- Chain I
- Small ribosomal subunit protein uS9
- Chain N
- Small ribosomal subunit protein uS14B
- Chain j
- Small ribosomal subunit protein uS10
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