J3_9T4R_033
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 9T4R|1|a|A|2543, 9T4R|1|a|U|2544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9T4R_033 not in the Motif Atlas
- Homologous match to J3_7A0S_011
- Geometric discrepancy: 0.0956
- The information below is about J3_7A0S_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9T4R|1|a|C|2542
9T4R|1|a|A|2543
9T4R|1|a|U|2544
9T4R|1|a|C|2545
*
9T4R|1|a|G|2570
9T4R|1|a|U|2571
9T4R|1|a|U|2572
*
9T4R|1|a|A|2586
9T4R|1|a|U|2587
9T4R|1|a|U|2588
9T4R|1|a|A|2589
9T4R|1|a|A|2590
9T4R|1|a|A|2591
9T4R|1|a|G|2592
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain U
- Large ribosomal subunit protein uL14
Coloring options: