J3_9T4R_035
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CC*GUUAAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 9T4R|1|a|U|2851, 9T4R|1|a|A|2853
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9T4R_035 not in the Motif Atlas
- Homologous match to J3_7A0S_013
- Geometric discrepancy: 0.233
- The information below is about J3_7A0S_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9T4R|1|a|C|2832
9T4R|1|a|C|2833
*
9T4R|1|a|G|2849
9T4R|1|a|U|2850
9T4R|1|a|U|2851
9T4R|1|a|A|2852
9T4R|1|a|A|2853
9T4R|1|a|U|2854
*
9T4R|1|a|A|2900
9T4R|1|a|A|2901
9T4R|1|a|U|2902
9T4R|1|a|C|2903
9T4R|1|a|G|2904
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain m
- Large ribosomal subunit protein bL17
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: