J3_9TZ5_013
3D structure
- PDB id
- 9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- CUG*CUAAC*GAACAG
- Length
- 14 nucleotides
- Bulged bases
- 9TZ5|1|a|A|2214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9TZ5_013 not in the Motif Atlas
- Homologous match to J3_7A0S_009
- Geometric discrepancy: 0.2135
- The information below is about J3_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17460.1
- Basepair signature
- cWW-tHH-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9TZ5|1|a|C|2107
9TZ5|1|a|U|2108
9TZ5|1|a|G|2109
*
9TZ5|1|a|C|2212
9TZ5|1|a|U|2213
9TZ5|1|a|A|2214
9TZ5|1|a|A|2215
9TZ5|1|a|C|2216
*
9TZ5|1|a|G|2239
9TZ5|1|a|A|2240
9TZ5|1|a|A|2241
9TZ5|1|a|C|2242
9TZ5|1|a|A|2243
9TZ5|1|a|G|2244
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 9
- Large ribosomal subunit protein bL28
- Chain o
- Large ribosomal subunit protein uL2
- Chain q
- Large ribosomal subunit protein bL9
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