J3_9TZ5_015
3D structure
- PDB id
- 9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- CUC*GUG*CAUAAG
- Length
- 12 nucleotides
- Bulged bases
- 9TZ5|1|a|U|2350, 9TZ5|1|a|A|2352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9TZ5_015 not in the Motif Atlas
- Geometric match to J3_8B0X_022
- Geometric discrepancy: 0.1625
- The information below is about J3_8B0X_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9TZ5|1|a|C|2311
9TZ5|1|a|U|2312
9TZ5|1|a|C|2313
*
9TZ5|1|a|G|2337
9TZ5|1|a|U|2338
9TZ5|1|a|G|2339
*
9TZ5|1|a|C|2348
9TZ5|1|a|A|2349
9TZ5|1|a|U|2350
9TZ5|1|a|A|2351
9TZ5|1|a|A|2352
9TZ5|1|a|G|2353
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein uL18
- Chain 8
- Large ribosomal subunit protein bL27
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain f
- Large ribosomal subunit protein uL5
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