J3_9TZ5_017
3D structure
- PDB id
- 9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 9TZ5|1|a|A|2534, 9TZ5|1|a|U|2535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9TZ5_017 not in the Motif Atlas
- Homologous match to J3_7A0S_011
- Geometric discrepancy: 0.1588
- The information below is about J3_7A0S_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9TZ5|1|a|C|2533
9TZ5|1|a|A|2534
9TZ5|1|a|U|2535
9TZ5|1|a|C|2536
*
9TZ5|1|a|G|2561
9TZ5|1|a|U|2562
9TZ5|1|a|A|2563
*
9TZ5|1|a|U|2577
9TZ5|1|a|U|2578
9TZ5|1|a|U|2579
9TZ5|1|a|A|2580
9TZ5|1|a|A|2581
9TZ5|1|a|A|2582
9TZ5|1|a|G|2583
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36
- Chain x
- Large ribosomal subunit protein uL14
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