J3_9UZK_013

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

9UZK|1|2|A|1374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9UZK_013 not in the Motif Atlas

Homologous match to J3_9PN5_040

Geometric discrepancy: 0.2008

The information below is about J3_9PN5_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.7

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9UZK|1|2|U|1346
9UZK|1|2|G|1347
*
9UZK|1|2|U|1356
9UZK|1|2|G|1357
9UZK|1|2|U|1358
9UZK|1|2|C|1359
*
9UZK|1|2|G|1371
9UZK|1|2|A|1372
9UZK|1|2|U|1373
9UZK|1|2|A|1374
9UZK|1|2|A|1375

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

Small ribosomal subunit protein uS2

Chain E

Small ribosomal subunit protein uS5

Chain T

Small ribosomal subunit protein eS17