J3_9VTH_012

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UG*UGUC*GUUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9VTH_012 not in the Motif Atlas

Homologous match to J3_9PN5_040

Geometric discrepancy: 0.0817

The information below is about J3_9PN5_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.7

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9VTH|1|11|U|1296
9VTH|1|11|G|1297
*
9VTH|1|11|U|1306
9VTH|1|11|G|1307
9VTH|1|11|U|1308
9VTH|1|11|C|1309
*
9VTH|1|11|G|1321
9VTH|1|11|U|1322
9VTH|1|11|U|1323
9VTH|1|11|A|1324
9VTH|1|11|A|1325

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS2

Chain SD

Small ribosomal subunit protein uS5

Chain SW

40S ribosomal protein S17-like