J3_9VTH_017
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AU*AUGAAAAG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_017 not in the Motif Atlas
- Geometric match to J3_9E6Q_001
- Geometric discrepancy: 0.1041
- The information below is about J3_9E6Q_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.4
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 12
Unit IDs
9VTH|1|13|A|22
9VTH|1|13|U|23
*
9VTH|1|14|A|366
9VTH|1|14|U|367
9VTH|1|14|G|368
9VTH|1|14|A|369
9VTH|1|14|A|370
9VTH|1|14|A|371
9VTH|1|14|A|372
9VTH|1|14|G|373
*
9VTH|1|14|C|400
9VTH|1|14|U|401
Current chains
- Chain 13
- 5.8S rRNA
- Chain 14
- 25S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein L4-like
- Chain LN
- 60S ribosomal protein L26-1
- Chain Lm
- 60S ribosomal protein L39-3
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