J3_9W0N_008
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGA*UUUAAAG*CAC
- Length
- 13 nucleotides
- Bulged bases
- 9W0N|1|1|A|1084
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9W0N_008 not in the Motif Atlas
- Homologous match to J3_6PRV_001
- Geometric discrepancy: 0.4885
- The information below is about J3_6PRV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37832.2
- Basepair signature
- cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9W0N|1|1|G|1055
9W0N|1|1|G|1056
9W0N|1|1|A|1057
*
9W0N|1|1|U|1081
9W0N|1|1|U|1082
9W0N|1|1|U|1083
9W0N|1|1|A|1084
9W0N|1|1|A|1085
9W0N|1|1|A|1086
9W0N|1|1|G|1087
*
9W0N|1|1|C|1102
9W0N|1|1|A|1103
9W0N|1|1|C|1104
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain F
- Large ribosomal subunit protein bL36A
- Chain i
- Large ribosomal subunit protein uL11
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