J3_9W0N_016
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 9W0N|1|1|A|2518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9W0N_016 not in the Motif Atlas
- Homologous match to J3_8B0X_023
- Geometric discrepancy: 0.1516
- The information below is about J3_8B0X_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9W0N|1|1|C|2517
9W0N|1|1|A|2518
9W0N|1|1|U|2519
9W0N|1|1|C|2520
*
9W0N|1|1|G|2545
9W0N|1|1|U|2546
9W0N|1|1|A|2547
*
9W0N|1|1|U|2561
9W0N|1|1|U|2562
9W0N|1|1|U|2563
9W0N|1|1|A|2564
9W0N|1|1|A|2565
9W0N|1|1|A|2566
9W0N|1|1|G|2567
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain c
- Large ribosomal subunit protein uL3
- Chain k
- Large ribosomal subunit protein uL14
Coloring options: