J3_9W0N_031
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9W0N_031 not in the Motif Atlas
- Homologous match to J3_8B0X_010
- Geometric discrepancy: 0.0918
- The information below is about J3_8B0X_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9W0N|1|3|C|1063
9W0N|1|3|G|1064
9W0N|1|3|U|1065
9W0N|1|3|C|1066
9W0N|1|3|A|1067
9W0N|1|3|G|1068
*
9W0N|1|3|C|1107
9W0N|1|3|G|1108
9W0N|1|3|C|1109
9W0N|1|3|A|1110
9W0N|1|3|A|1111
9W0N|1|3|C|1112
9W0N|1|3|C|1113
*
9W0N|1|3|G|1187
9W0N|1|3|A|1188
9W0N|1|3|U|1189
9W0N|1|3|G|1190
9W0N|1|3|A|1191
9W0N|1|3|C|1192
9W0N|1|3|G|1193
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain G
- Small ribosomal subunit protein uS2
- Chain H
- Small ribosomal subunit protein uS3
- Chain J
- Small ribosomal subunit protein uS5
- Chain N
- Small ribosomal subunit protein uS9
- Chain O
- Small ribosomal subunit protein uS10
- Chain S
- Small ribosomal subunit protein uS14
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