J3_9WNQ_030

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9WNQ|1|b|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WNQ_030 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.2024

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9WNQ|1|b|C|2091
9WNQ|1|b|U|2092
9WNQ|1|b|G|2093
*
9WNQ|1|b|C|2196
9WNQ|1|b|U|2197
9WNQ|1|b|A|2198
9WNQ|1|b|A|2199
9WNQ|1|b|C|2200
*
9WNQ|1|b|G|2223
9WNQ|1|b|G|2224
9WNQ|1|b|A|2225
9WNQ|1|b|C|2226
9WNQ|1|b|A|2227
9WNQ|1|b|G|2228

Current chains

Chain b

23S ribosomal RNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL28

Chain c

Large ribosomal subunit protein uL2

Chain h

50S ribosomal protein L9