J3_9Y79_006

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9Y79|1|D|U|871, 9Y79|1|D|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Y79_006 not in the Motif Atlas

Homologous match to J3_6CZR_018

Geometric discrepancy: 0.2347

The information below is about J3_6CZR_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.3

Basepair signature

cWW-tSH-F-tWW-tHS-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9Y79|1|D|C|826
9Y79|1|D|U|827
9Y79|1|D|U|828
9Y79|1|D|G|829
*
9Y79|1|D|C|857
9Y79|1|D|G|858
9Y79|1|D|G|859
9Y79|1|D|A|860
9Y79|1|D|G|861
*
9Y79|1|D|C|868
9Y79|1|D|G|869
9Y79|1|D|U|870
9Y79|1|D|U|871
9Y79|1|D|A|872
9Y79|1|D|A|873
9Y79|1|D|G|874

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

Small ribosomal subunit protein bS21

Chain G

30S ribosomal protein S2

Chain N

Small ribosomal subunit protein uS8